Discussion:
[apollo] Problem running apollo release
carlos vargas
2016-03-25 09:56:36 UTC
Permalink
Hello everyone,

I am having trouble running ./apollo release, the error is the following:


FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':release'.
Warning: Could not find file
/home/cvargas/Apollo/jbrowse-download/JBrowse-dev.zip to copy.

I have tried supplying externally the zip file but when running apollo
release the file is unziped and it gives the error of not finding it. I
have no trouble when running ./apollo deploy. Does anybody have an idea to
solve this?

Thank you in advance!
Carlos
Colin
2016-03-25 14:16:54 UTC
Permalink
Hi Carlos

I would checkout the Apollo 2.0.2 release tag for your build and go from
there. The master branch will probably give that error right now because
it's targetting the latest jbrowse and needs some adjustments (
https://github.com/GMOD/Apollo/issues/941 is tracking that issue)

It is possible that you will need to go into the jbrowse-download folder
and also checkout the 1.11.6-release tag there as well for the time being.

Let me know if that helps!


-Colin
Post by carlos vargas
Hello everyone,
FAILURE: Build failed with an exception.
Execution failed for task ':release'.
Warning: Could not find file
/home/cvargas/Apollo/jbrowse-download/JBrowse-dev.zip to copy.
I have tried supplying externally the zip file but when running apollo
release the file is unziped and it gives the error of not finding it. I
have no trouble when running ./apollo deploy. Does anybody have an idea to
solve this?
Thank you in advance!
Carlos
This list is for the Apollo Annotation Editing Tool. Info at
http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with
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carlos vargas
2016-03-28 22:48:26 UTC
Permalink
Dear Colin,

Thank you very much for your prompt reply. I changed tag 2.0.2 for Apollo
when downloading it and 1.11.6 for jbrowse in the apollo-config.groovy file
but still it can't build the war file still giving the same error of not
finding JBrowse-dev.zip. I also tried using git checkout
tags/1.11.6-release in the jbrowse-download folder but it still gave the
same error. In both cases deploy did work. Do you have other suggestions?

Best,
Carlos
Post by Colin
Hi Carlos
I would checkout the Apollo 2.0.2 release tag for your build and go from
there. The master branch will probably give that error right now because
it's targetting the latest jbrowse and needs some adjustments (
https://github.com/GMOD/Apollo/issues/941 is tracking that issue)
It is possible that you will need to go into the jbrowse-download folder
and also checkout the 1.11.6-release tag there as well for the time being.
Let me know if that helps!
-Colin
Post by carlos vargas
Hello everyone,
FAILURE: Build failed with an exception.
Execution failed for task ':release'.
Warning: Could not find file
/home/cvargas/Apollo/jbrowse-download/JBrowse-dev.zip to copy.
I have tried supplying externally the zip file but when running apollo
release the file is unziped and it gives the error of not finding it. I
have no trouble when running ./apollo deploy. Does anybody have an idea to
solve this?
Thank you in advance!
Carlos
This list is for the Apollo Annotation Editing Tool. Info at
http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with
| 2. In the subject line of your email type: unsubscribe apollo | 3. Leave
the message body blank.
This list is for the Apollo Annotation Editing Tool. Info at
http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with
2. In the subject line of your email type: unsubscribe apollo | 3. Leave
the message body blank.
Nathan Dunn
2016-03-28 23:35:03 UTC
Permalink
Is the output the same?

The only thing that I can think of would be to do:

./apollo clean-all
./apollo release

but I don’t think it will do anything different.

We are working on an update to this script if you can’t get this working.

Hopefully, Colin may come up with something else, but in the interim, you can probably just use the deploy script.


Nathan
Post by carlos vargas
Dear Colin,
Thank you very much for your prompt reply. I changed tag 2.0.2 for Apollo when downloading it and 1.11.6 for jbrowse in the apollo-config.groovy file but still it can't build the war file still giving the same error of not finding JBrowse-dev.zip. I also tried using git checkout tags/1.11.6-release in the jbrowse-download folder but it still gave the same error. In both cases deploy did work. Do you have other suggestions?
Best,
Carlos
Hi Carlos
I would checkout the Apollo 2.0.2 release tag for your build and go from there. The master branch will probably give that error right now because it's targetting the latest jbrowse and needs some adjustments (https://github.com/GMOD/Apollo/issues/941 <https://github.com/GMOD/Apollo/issues/941> is tracking that issue)
It is possible that you will need to go into the jbrowse-download folder and also checkout the 1.11.6-release tag there as well for the time being.
Let me know if that helps!
-Colin
Hello everyone,
FAILURE: Build failed with an exception.
Execution failed for task ':release'.
Warning: Could not find file /home/cvargas/Apollo/jbrowse-download/JBrowse-dev.zip to copy.
I have tried supplying externally the zip file but when running apollo release the file is unziped and it gives the error of not finding it. I have no trouble when running ./apollo deploy. Does anybody have an idea to solve this?
Thank you in advance!
Carlos
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
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