[apollo] Dragged annotations

[matthew couchman (JIC)]

Hi,

I’ve added a track to Apollo and the features are showing in JBrowse but I can’t seem to drag them onto the “User-created Annotations” lane. They get highlighted OK and I can drag them up but when I release the mouse button over the annotations lane they vanish. I’m logged on as an admin and I haven’t altered any permissions from the distribution. Our trackList.json file looks like this:

{
"tracks" : [
{
"storeClass" : "JBrowse/Store/Sequence/StaticChunked",
"chunkSize" : 20000,
"urlTemplate" : "seq/{refseq_dirpath}/{refseq}-",
"label" : "DNA",
"type" : "SequenceTrack",
"category" : "Reference sequence",
"key" : "Reference sequence"
},
{
"style" : {
"className" : "feature"
},
"key" : " Gene_Model",
"storeClass" : "JBrowse/Store/SeqFeature/NCList",
"trackType" : null,
"urlTemplate" : "tracks/Gene_Model/{refseq}/trackData.json",
"compress" : 0,
"type" : "FeatureTrack",
"label" : "Gene_Model"
},
],
"formatVersion" : 1
}

I can’t see anything that looks related in tomcat’s logs. Are there any permissions that I need to set to enable user annotation?

Best regards,

Matt.

[Nathan Dunn]

That is odd. Everything looks right.

If you look in your javascript console does everything look fine? You should get a single 404 error for missing tracks.conf but that should be it.

Nathan

Post by matthew couchman (JIC)
Hi,
{
"tracks" : [
{
"storeClass" : "JBrowse/Store/Sequence/StaticChunked",
"chunkSize" : 20000,
"urlTemplate" : "seq/{refseq_dirpath}/{refseq}-",
"label" : "DNA",
"type" : "SequenceTrack",
"category" : "Reference sequence",
"key" : "Reference sequence"
},
{
"style" : {
"className" : "feature"
},
"key" : " Gene_Model",
"storeClass" : "JBrowse/Store/SeqFeature/NCList",
"trackType" : null,
"urlTemplate" : "tracks/Gene_Model/{refseq}/trackData.json",
"compress" : 0,
"type" : "FeatureTrack",
"label" : "Gene_Model"
},
],
"formatVersion" : 1
}
I can’t see anything that looks related in tomcat’s logs. Are there any permissions that I need to set to enable user annotation?
Best regards,
Matt.
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>