[apollo] metadata in csv

[Sofia Robb]

Hello!

I currently have JBrowse and Apollo running separately. From within my
Apollo dir I point to my JBrowse data dir. I am using a csv file for my
metadata for JBrowse, and It works great with JBrowse, but my metadata does
not show up in my JBrowse like track selector within Apollo.

How can I make this work with apollo?

Thanks!
Sofia

[Nathan Dunn]

Sofia,

Are you seeing any 404 (or other errors) in your network console (or in the tomcat logs)?

I’m wondering if its just misrouting the CSV data (I hope). If so, it should be a pretty easy fix.

Nathan

Post by Sofia Robb
Hello!
I currently have JBrowse and Apollo running separately. From within my Apollo dir I point to my JBrowse data dir. I am using a csv file for my metadata for JBrowse, and It works great with JBrowse, but my metadata does not show up in my JBrowse like track selector within Apollo.
How can I make this work with apollo?
Thanks!
Sofia
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/

[Sofia Robb]

Yes I am!

GET
http://genomes.stowers.org:8080/apollo/17243046418848101441634387168/jbrowse/data/Pmar_v11/includes/pmar_metadata.csv
404 (Not Found)

Post by Nathan Dunn
Sofia,
Are you seeing any 404 (or other errors) in your network console (or in the tomcat logs)?
I’m wondering if its just misrouting the CSV data (I hope). If so, it
should be a pretty easy fix.
Nathan

Post by Sofia Robb
Hello!
I currently have JBrowse and Apollo running separately. From within my

Apollo dir I point to my JBrowse data dir. I am using a csv file for my
metadata for JBrowse, and It works great with JBrowse, but my metadata does
not show up in my JBrowse like track selector within Apollo.

Post by Sofia Robb
How can I make this work with apollo?
Thanks!
Sofia
This list is for the Apollo Annotation Editing Tool. Info at

http://genomearchitect.org/

Post by Sofia Robb
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[Nathan Dunn]

Sofia,

Looks like we just overlooked this. I opened a ticket for it. I’ll try to get it resolved either later today or earlier next week.

https://github.com/GMOD/Apollo/issues/1448 <https://github.com/GMOD/Apollo/issues/1448>

Thanks for reporting it,

Nathan

Post by Sofia Robb
Yes I am!
GET http://genomes.stowers.org:8080/apollo/17243046418848101441634387168/jbrowse/data/Pmar_v11/includes/pmar_metadata.csv <http://genomes.stowers.org:8080/apollo/17243046418848101441634387168/jbrowse/data/Pmar_v11/includes/pmar_metadata.csv> 404 (Not Found)
Sofia,
Are you seeing any 404 (or other errors) in your network console (or in the tomcat logs)?
I’m wondering if its just misrouting the CSV data (I hope). If so, it should be a pretty easy fix.
Nathan

Post by Sofia Robb
Hello!
I currently have JBrowse and Apollo running separately. From within my Apollo dir I point to my JBrowse data dir. I am using a csv file for my metadata for JBrowse, and It works great with JBrowse, but my metadata does not show up in my JBrowse like track selector within Apollo.
How can I make this work with apollo?
Thanks!
Sofia
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>

This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/

[Nathan Dunn]

In most JBrowse configurations this isn’t a problem, however, in the cases it is I merged a fix for this into mainline. (https://github.com/GMOD/Apollo/issues/1448 <https://github.com/GMOD/Apollo/issues/1448> , https://github.com/GMOD/Apollo/pull/1449 <https://github.com/GMOD/Apollo/pull/1449>).

Nathan

Post by Sofia Robb
Yes I am!
GET http://genomes.stowers.org:8080/apollo/17243046418848101441634387168/jbrowse/data/Pmar_v11/includes/pmar_metadata.csv <http://genomes.stowers.org:8080/apollo/17243046418848101441634387168/jbrowse/data/Pmar_v11/includes/pmar_metadata.csv> 404 (Not Found)
Sofia,
Are you seeing any 404 (or other errors) in your network console (or in the tomcat logs)?
I’m wondering if its just misrouting the CSV data (I hope). If so, it should be a pretty easy fix.
Nathan

Post by Sofia Robb
Hello!
I currently have JBrowse and Apollo running separately. From within my Apollo dir I point to my JBrowse data dir. I am using a csv file for my metadata for JBrowse, and It works great with JBrowse, but my metadata does not show up in my JBrowse like track selector within Apollo.
How can I make this work with apollo?
Thanks!
Sofia
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>

This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/ <http://genomearchitect.org/>
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/