[apollo] missing hideTracksLabel

[Sofia Robb]

I just upgraded to 2.0.3, and am getting a jbrowse related error, maybe I
missed a step.

I pulled the new version from github
then I deployed a new war file.

Did I miss a step in upgrading the jbrowse_download?

In my browser in the javascript console I get this error and the browser
won't load, I get a white screen.

dojo.js:1662 GET
http://simrbase.sgc.loc:8080/apollo/17888380461548434734/jbrowse/plugins/HideTrackLabels/js/main.js
404 (Not Found)

Thanks,
Sofia

[Nathan Dunn]

Did you upgrade using the existing Apollo checkout? If so, you need to use “./apollo clean-all” first.



If not, its probably because bower wasn’t installed properly (we have a patch in the master and updated the build notes). In the interim type:

“sudo npm install -g bower”

(install node.js (which includes npm) if not installed)

Then run “./apollo clean-all” and “./apollo deploy”

If that doesn’t fix it, please send your build console log and we’ll look further into it.

Nathan Dunn, PhD
Berkeley Bioinformatics Open-source Projects (BBOP)
Genomics Division, Lawrence Berkeley National Laboratory

I just upgraded to 2.0.3, and am getting a jbrowse related error, maybe I missed a step.
I pulled the new version from github
then I deployed a new war file.
Did I miss a step in upgrading the jbrowse_download?
In my browser in the javascript console I get this error and the browser won't load, I get a white screen.
dojo.js:1662 GET http://simrbase.sgc.loc:8080/apollo/17888380461548434734/jbrowse/plugins/HideTrackLabels/js/main.js <http://simrbase.sgc.loc:8080/apollo/17888380461548434734/jbrowse/plugins/HideTrackLabels/js/main.js> 404 (Not Found)
Thanks,
Sofia
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/

[Sofia Robb]

Hi Nathan,


This worked! Thanks!


What I don't understand, is that I did upgrade with the current Apollo
checkout, but I still needed to run the npm install -g bower. But I am
happy! It is working.

Thanks,
Sofia

Post by Nathan Dunn
Did you upgrade using the existing Apollo checkout? If so, you need to
use “./apollo clean-all” first.
If not, its probably because bower wasn’t installed properly (we have a
“sudo npm install -g bower”
(install node.js (which includes npm) if not installed)
Then run “./apollo clean-all” and “./apollo deploy”
If that doesn’t fix it, please send your build console log and we’ll look
further into it.
Nathan Dunn, PhD
Berkeley Bioinformatics Open-source Projects (BBOP)
Genomics Division, Lawrence Berkeley National Laboratory
I just upgraded to 2.0.3, and am getting a jbrowse related error, maybe I missed a step.
I pulled the new version from github
then I deployed a new war file.
Did I miss a step in upgrading the jbrowse_download?
In my browser in the javascript console I get this error and the browser
won't load, I get a white screen.
dojo.js:1662 GET
http://simrbase.sgc.loc:8080/apollo/17888380461548434734/jbrowse/plugins/HideTrackLabels/js/main.js
404 (Not Found)
Thanks,
Sofia
This list is for the Apollo Annotation Editing Tool. Info at
http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with
2. In the subject line of your email type: unsubscribe apollo | 3. Leave
the message body blank.
This list is for the Apollo Annotation Editing Tool. Info at
http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with
2. In the subject line of your email type: unsubscribe apollo | 3. Leave
the message body blank.

[Lbl]

Glad it worked out.

I made a mistake in the install script and the docker build I used to test this explicitly added bower.

Nathan

Post by Sofia Robb
Hi Nathan,
This worked! Thanks!
What I don't understand, is that I did upgrade with the current Apollo checkout, but I still needed to run the npm install -g bower. But I am happy! It is working.
Thanks,
Sofia

Post by Nathan Dunn
Did you upgrade using the existing Apollo checkout? If so, you need to use “./apollo clean-all” first.
“sudo npm install -g bower”
(install node.js (which includes npm) if not installed)
Then run “./apollo clean-all” and “./apollo deploy”
If that doesn’t fix it, please send your build console log and we’ll look further into it.
Nathan Dunn, PhD
Berkeley Bioinformatics Open-source Projects (BBOP)
Genomics Division, Lawrence Berkeley National Laboratory

I just upgraded to 2.0.3, and am getting a jbrowse related error, maybe I missed a step.
I pulled the new version from github
then I deployed a new war file.
Did I miss a step in upgrading the jbrowse_download?
In my browser in the javascript console I get this error and the browser won't load, I get a white screen.
dojo.js:1662 GET http://simrbase.sgc.loc:8080/apollo/17888380461548434734/jbrowse/plugins/HideTrackLabels/js/main.js 404 (Not Found)
Thanks,
Sofia
This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/

This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/

This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/